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Manuscript type (click on type for subselection) | No. | Publikationen | Jahr | Link |
---|---|---|---|---|
type | No. | Publikationen | Jahr | Link |
Journal Article | 89 | Huber, T., Torda, A. E. Protein Fold Recognition Without Boltzmann Statistics or Explicit Physical Basis Protein Science, 7(1): 142-149. |
1998 | Huber, T., Torda, A. E. (1998) Protein Fold Recognition Without Boltzmann Statistics or Explicit Physical Basis . Protein Science, 7(1):142-149. |
Journal Article | 90 | Dosztányi, Zs, Torda, A. E. Amino acid substitution matrices based on force fields Bioinformatics, 17(8): 686-699. |
2001 | Dosztányi, Zs, Torda, A. E. (2001) Amino acid substitution matrices based on force fields . Bioinformatics, 17(8):686-699. |
Journal Article | 91 | Huber, T., Torda, A. E., van Gunsteren, W. F. Optimization methods for conformational sampling using a Boltzmann-weighted mean field approach Biopolymers, 39(1): 103-114. |
1996 | Huber, T., Torda, A. E., van Gunsteren, W. F. (1996) Optimization methods for conformational sampling using a Boltzmann-weighted mean field approach . Biopolymers, 39(1):103-114. |
Journal Article | 92 | Procter, J, B, Perry, A.J., Torda, A.E. Comparing objects of different sizes: treating proteins as strings Australian Journal of Chemistry, 54(6): 367-374. |
2001 | Procter, J, B, Perry, A.J., Torda, A.E. (2001) Comparing objects of different sizes: treating proteins as strings . Australian Journal of Chemistry, 54(6):367-374. |
Journal Article | 93 | Torda, A. E., Scheek, R.M., van Gunsteren, W. F. Time-averaged nuclear overhauser effect distance restraints applied to tendamistat J Mol Biol, 214(01): 223-235. |
1990 | Torda, A. E., Scheek, R.M., van Gunsteren, W. F. (1990) Time-averaged nuclear overhauser effect distance restraints applied to tendamistat . J Mol Biol, 214(01):223-235. |
Book Section | 94 | Torda, A. E., van Gunsteren, W. F. Molecular modeling using nuclear magnetic resonance 01 In Reviews in computational chemistry III (Lipkowitz, KB, Boyd, DB, Boyd, DB, ed.), Vol. III, pp. 143-172. VCH. |
1992 | Torda, A. E., van Gunsteren, W. F. (1992) Molecular modeling using nuclear magnetic resonance 01. In Reviews in computational chemistry III (Lipkowitz, KB, Boyd, DB, Boyd, DB, ed.), Vol. III, pp. 143-172. VCH. |
Journal Article | 95 | van Gunsteren, W. F., Brunne, R. M., Gros, P., van Schaik, R. C., Schiffer, C. A., Torda, A. E. Accounting for molecular mobility in structure determination based on nuclear magnetic resonance spectroscopic and X-ray diffraction data 01 Methods Enzymol, 239(01): 619-54.. |
1994 | van Gunsteren, W. F., Brunne, R. M., Gros, P., van Schaik, R. C., Schiffer, C. A., Torda, A. E. (1994) Accounting for molecular mobility in structure determination based on nuclear magnetic resonance spectroscopic and X-ray diffraction data 01. Methods Enzymol, 239(01):619-54.. |
Journal Article | 96 | Reith, D., Huber, T., Müller-Plathe, F., Torda, A. E. Free energy approximations in simple lattice proteins Journal of Chemical Physics, 114(11): 4998-5005. |
2001 | Reith, D., Huber, T., Müller-Plathe, F., Torda, A. E. (2001) Free energy approximations in simple lattice proteins . Journal of Chemical Physics, 114(11):4998-5005. |
Journal Article | 97 | Scott, W. R. P., Hunenberger, P. H., Tironi, I. G., Mark, A. E., Billeter, S. R., Fennen, J., Torda, A. E., Huber, T., Kruger, P., van Gunsteren, W. F. The GROMOS biomolecular simulation program package Journal of Physical Chemistry A, 103(19): 3596-3607. |
1999 | Scott, W. R. P., Hunenberger, P. H., Tironi, I. G., Mark, A. E., Billeter, S. R., Fennen, J., Torda, A. E., Huber, T., Kruger, P., van Gunsteren, W. F. (1999) The GROMOS biomolecular simulation program package . Journal of Physical Chemistry A, 103(19):3596-3607. |
Journal Article | 98 | Russell, A, Torda, A. E. Protein sequence threading - averaging over structures Proteins: Structure Function and Genetics, 47(01): 496-505. |
2002 | Russell, A, Torda, A. E. (2002) Protein sequence threading - averaging over structures . Proteins: Structure Function and Genetics, 47(01):496-505. |
Journal Article | 99 | Huber, T., Torda, A.E. Protein sequence threading, the alignment problem and a two step strategy Journal of Computational Chemistry, 20(14): 1455-1467. |
1999 | Huber, T., Torda, A.E. (1999) Protein sequence threading, the alignment problem and a two step strategy . Journal of Computational Chemistry, 20(14):1455-1467. |
Book Section | 100 | Huber, T., Torda, A. E. Protein structure prediction by threading: force field philosophy, approaches to alignment. In Protein structure prediction: A bioinformatic approach (Tsigelny, I. F., ed.), Vol. 01, pp. 263-298. International University Line. |
2002 | Huber, T., Torda, A. E. (2002) Protein structure prediction by threading: force field philosophy, approaches to alignment. . In Protein structure prediction: A bioinformatic approach (Tsigelny, I. F., ed.), Vol. 01, pp. 263-298. International University Line. |
Journal Article | 101 | Torda, A. E., Procter, J. B., Huber, T. Wurst: A protein threading server with a structural scoring function, sequence profiles and optimised substitution matrices Nucleic Acids Research, 32(01): W532-W535. |
2004 | Torda, A. E., Procter, J. B., Huber, T. (2004) Wurst: A protein threading server with a structural scoring function, sequence profiles and optimised substitution matrices . Nucleic Acids Research, 32(01):W532-W535. |
Journal Article | 102 | Torda, A. E. Protein sequence optimization - theory, practice and fundamental impossibility Soft Materials, 2(01): 1-10. |
2004 | Torda, A. E. (2004) Protein sequence optimization - theory, practice and fundamental impossibility . Soft Materials, 2(01):1-10. |
Journal Article | 103 | Kühnl, J., Bobik, T., Procter, J. B., Burmeister, C., Höppner, J., Wilde, I., Lüersen, K., Torda, A. E., Walter, R. D., Liebau, E. Functional analysis of the methylmalonyl-CoA epimerase from Caenorhabditis elegans FEBS Journal, 272(01): 1465-1477. |
2005 | Kühnl, J., Bobik, T., Procter, J. B., Burmeister, C., Höppner, J., Wilde, I., Lüersen, K., Torda, A. E., Walter, R. D., Liebau, E. (2005) Functional analysis of the methylmalonyl-CoA epimerase from Caenorhabditis elegans . FEBS Journal, 272(01):1465-1477. |
Journal Article | 104 | Vieth, S., Torda, A. E., Asper, M., Schmitz, H., Günther, S. Sequence analysis of L RNA of Lassa virus Virology, 318(1): 153-168. |
2004 | Vieth, S., Torda, A. E., Asper, M., Schmitz, H., Günther, S. (2004) Sequence analysis of L RNA of Lassa virus . Virology, 318(1):153-168. |
Journal Article | 105 | Cootes, A. P., Curmi, P. M. G., Cunningham, R., Donnelly, C., Torda, A. E. The dependence of amino acid pair correlations on structural environment Proteins-Structure Function and Bioinformatics, 32(2): 175-189. |
1998 | Cootes, A. P., Curmi, P. M. G., Cunningham, R., Donnelly, C., Torda, A. E. (1998) The dependence of amino acid pair correlations on structural environment . Proteins-Structure Function and Bioinformatics, 32(2):175-189. |
Journal Article | 106 | Huber, T., Torda, A. E., van Gunsteren, W. F. Structure optimization combining soft-core interaction functions, the diffusion equation method, and molecular dynamics Journal of Physical Chemistry A, 101(33): 5926-5930. |
1997 | Huber, T., Torda, A. E., van Gunsteren, W. F. (1997) Structure optimization combining soft-core interaction functions, the diffusion equation method, and molecular dynamics . Journal of Physical Chemistry A, 101(33):5926-5930. |
Journal Article | 107 | Nanzer, A. P., Torda, A. E., Bisang, C., Weber, C., Robinson, J. A., van Gunsteren, W. F. Dynamical studies of peptide motifs in the Plasmodium falciparum circumsporozoite surface protein by restrained and unrestrained MD simulations Journal of Molecular Biology, 267(4): 1012-1025. |
1997 | Nanzer, A. P., Torda, A. E., Bisang, C., Weber, C., Robinson, J. A., van Gunsteren, W. F. (1997) Dynamical studies of peptide motifs in the Plasmodium falciparum circumsporozoite surface protein by restrained and unrestrained MD simulations . Journal of Molecular Biology, 267(4):1012-1025. |
Journal Article | 108 | Nanzer, A. P., Huber, T., Torda, A. E., van Gunsteren, W. F. Molecular dynamics simulation using weak-coupling NOE distance restraining Journal of Biomolecular NMR, 8(3): 285-291. |
1996 | Nanzer, A. P., Huber, T., Torda, A. E., van Gunsteren, W. F. (1996) Molecular dynamics simulation using weak-coupling NOE distance restraining . Journal of Biomolecular NMR, 8(3):285-291. |
Journal Article | 109 | Ulrich, P., Scott, W., van Gunsteren, W.F., Torda, A. E. Protein Structure Prediction Force Fields - Parametrization With Quasi-Newtonian Dynamics Proteins, 27(3): 367-384. |
1997 | Ulrich, P., Scott, W., van Gunsteren, W.F., Torda, A. E. (1997) Protein Structure Prediction Force Fields - Parametrization With Quasi-Newtonian Dynamics . Proteins, 27(3):367-384. |
Journal Article | 110 | Nanzer, A. P., van Gunsteren, W. F., Torda, A. E. Parametrization of Time-Averaged Distance Restraints in MD Simulations Journal of Biomolecular NMR, 6(3): 313-320. |
1995 | Nanzer, A. P., van Gunsteren, W. F., Torda, A. E. (1995) Parametrization of Time-Averaged Distance Restraints in MD Simulations . Journal of Biomolecular NMR, 6(3):313-320. |
Journal Article | 111 | Fennen, J., Torda, A. E., van Gunsteren, W. F. Structure Refinement with Molecular-Dynamics and a Boltmann-Weighted Ensemble Journal of Biomolecular NMR, 6(2): 163-170. |
1995 | Fennen, J., Torda, A. E., van Gunsteren, W. F. (1995) Structure Refinement with Molecular-Dynamics and a Boltmann-Weighted Ensemble . Journal of Biomolecular NMR, 6(2):163-170. |
Journal Article | 112 | Huber, T., Torda, A. E., van Gunsteren, W. F. Local Elevation - a Method for Improving the Searching Properties of Molecular-Dynamics Simulation Journal of Computer-Aided Molecular Design, 8(6): 695-708. |
1994 | Huber, T., Torda, A. E., van Gunsteren, W. F. (1994) Local Elevation - a Method for Improving the Searching Properties of Molecular-Dynamics Simulation . Journal of Computer-Aided Molecular Design, 8(6):695-708. |
Journal Article | 113 | Nanzer, A. P., Poulsen, F. M., van Gunsteren, W. F., Torda, A. E. A Reassessment of the Structure of Chymotrypsin Inhibitor-2 (Ci-2) Using Time-Averaged NMR Restraints Biochemistry, 33(48): 14503-14511. |
1994 | Nanzer, A. P., Poulsen, F. M., van Gunsteren, W. F., Torda, A. E. (1994) A Reassessment of the Structure of Chymotrypsin Inhibitor-2 (Ci-2) Using Time-Averaged NMR Restraints . Biochemistry, 33(48):14503-14511. |
Journal Article | 114 | Torda, A. E., van Gunsteren, W. F. Algorithms for Clustering Molecular-Dynamics Configurations Journal of Computational Chemistry, 15(12): 1331-1340. |
1994 | Torda, A. E., van Gunsteren, W. F. (1994) Algorithms for Clustering Molecular-Dynamics Configurations . Journal of Computational Chemistry, 15(12):1331-1340. |
Journal Article | 115 | van Gunsteren, W. F., Luque, F. J., Timms, D., Torda, A. E. Molecular Mechanics in Biology - from Structure to Function, Taking Account of Solvation Annual Review of Biophysics and Biomolecular Structure, 23(01): 847-863. |
1994 | van Gunsteren, W. F., Luque, F. J., Timms, D., Torda, A. E. (1994) Molecular Mechanics in Biology - from Structure to Function, Taking Account of Solvation . Annual Review of Biophysics and Biomolecular Structure, 23(01):847-863. |
Journal Article | 116 | van Schaik, R. C., Berendsen, H. J. C., Torda, A. E., van Gunsteren, W. F. A Structure Refinement Method Based on Molecular-Dynamics in 4 Spatial Dimensions Journal of Molecular Biology, 234(3): 751-762. |
1993 | van Schaik, R. C., Berendsen, H. J. C., Torda, A. E., van Gunsteren, W. F. (1993) A Structure Refinement Method Based on Molecular-Dynamics in 4 Spatial Dimensions . Journal of Molecular Biology, 234(3):751-762. |
Journal Article | 117 | Torda, A. E., Brunne, R. M., Huber, T., Kessler, H., van Gunsteren, W. F. Structure Refinement Using Time-Averaged J-Coupling Constant Restraints Journal of Biomolecular NMR, 3(1): 55-66. |
1993 | Torda, A. E., Brunne, R. M., Huber, T., Kessler, H., van Gunsteren, W. F. (1993) Structure Refinement Using Time-Averaged J-Coupling Constant Restraints . Journal of Biomolecular NMR, 3(1):55-66. |
Journal Article | 118 | van Gunsteren, W. F., Gros, P., Torda, A. E., Berendsen, H. J. C., van Schaik, R. C. On Deriving Spatial Protein-Structure from NMR or X-Ray-Diffraction Data ://A1991GP94800010 Ciba Foundation Symposia, 161(01): 150-166. |
1991 | van Gunsteren, W. F., Gros, P., Torda, A. E., Berendsen, H. J. C., van Schaik, R. C. (1991) On Deriving Spatial Protein-Structure from NMR or X-Ray-Diffraction Data ://A1991GP94800010. Ciba Foundation Symposia, 161(01):150-166. |
Journal Article | 119 | Torda, A. E., van Gunsteren, W. F. The Refinement of NMR Structures by Molecular-Dynamics Simulation Computer Physics Communications, 62(2-3): 289-296. |
1991 | Torda, A. E., van Gunsteren, W. F. (1991) The Refinement of NMR Structures by Molecular-Dynamics Simulation . Computer Physics Communications, 62(2-3):289-296. |
Journal Article | 120 | Torda, A. E. Perspectives in protein-fold recognition Curr Opin Struct Biol, 7(2): 200-5. |
1997 | Torda, A. E. (1997) Perspectives in protein-fold recognition . Curr Opin Struct Biol, 7(2):200-5. |
Journal Article | 121 | Torda, A. E., Scheek, R. M., van Gunsteren, W. F. Time-Dependent Distance Restraints in Molecular-Dynamics Simulations Chemical Physics Letters, 157(4): 289-294. |
1989 | Torda, A. E., Scheek, R. M., van Gunsteren, W. F. (1989) Time-Dependent Distance Restraints in Molecular-Dynamics Simulations . Chemical Physics Letters, 157(4):289-294. |
Journal Article | 122 | Torda, A. E., Norton, R. S. Proton NMR Relaxation Study of the Dynamics of Anthopleurin-a in Solution Biopolymers, 28(3): 703-716. |
1989 | Torda, A. E., Norton, R. S. (1989) Proton NMR Relaxation Study of the Dynamics of Anthopleurin-a in Solution . Biopolymers, 28(3):703-716. |
Journal Article | 123 | Torda, A. E., Mabbutt, B. C., van Gunsteren, W. F., Norton, R. S. Backbone Folding of the Polypeptide Cardiac Stimulant Anthopleurin-a Determined by Nuclear Magnetic-Resonance, Distance Geometry and Molecular-Dynamics Febs Letters, 239(2): 266-270. |
1988 | Torda, A. E., Mabbutt, B. C., van Gunsteren, W. F., Norton, R. S. (1988) Backbone Folding of the Polypeptide Cardiac Stimulant Anthopleurin-a Determined by Nuclear Magnetic-Resonance, Distance Geometry and Molecular-Dynamics . Febs Letters, 239(2):266-270. |
Journal Article | 124 | Torda, A. E., Norton, R. S. Amide Proton-Exchange Rates in Cardioactive Sea-Anemone Polypeptides ://A1987K456200020 Biochemistry International, 15(3): 659-666. |
1987 | Torda, A. E., Norton, R. S. (1987) Amide Proton-Exchange Rates in Cardioactive Sea-Anemone Polypeptides ://A1987K456200020. Biochemistry International, 15(3):659-666. |
Journal Article | 125 | Torda, A. E., Baldwin, G. S., Norton, R. S. High-Resolution H1NMR Studies of Human Gastrin 01 Proceedings of the Australian Biochemical Society, 16(01): 18-18. |
1984 | Torda, A. E., Baldwin, G. S., Norton, R. S. (1984) High-Resolution H1NMR Studies of Human Gastrin 01. Proceedings of the Australian Biochemical Society, 16(01):18-18. |
Journal Article | 126 | Torda, A. E., Baldwin, G. S., Norton, R. S. High-Resolution Proton Nuclear Magnetic-Resonance Studies of Human Gastrin Biochemistry, 24(7): 1720-1727. |
1985 | Torda, A. E., Baldwin, G. S., Norton, R. S. (1985) High-Resolution Proton Nuclear Magnetic-Resonance Studies of Human Gastrin . Biochemistry, 24(7):1720-1727. |
Journal Article | 127 | Nguyen, P.H., Mittag, E., Torda, A.E., Stock, G. Improved Wang-Landau sampling through the use of a generalised effective potential Journal of Chemical Physics, 124(01): 154107. |
2006 | Nguyen, P.H., Mittag, E., Torda, A.E., Stock, G. (2006) Improved Wang-Landau sampling through the use of a generalised effective potential . Journal of Chemical Physics, 124(01):154107. |
Journal Article | 128 | Jordanova, R., Radoslavov, G., Fischer, P., Torda, A. E., Lottspeich, F., Boteva, R., Walter, R. D., Bankov, I., Liebau, E. The highly abundant protein Ag-Ibp55 from Ascaridia galli represents a novel type of lipid-binding proteins Journal of Biological Chemistry, 280(50): 41429-41438. |
2005 | Jordanova, R., Radoslavov, G., Fischer, P., Torda, A. E., Lottspeich, F., Boteva, R., Walter, R. D., Bankov, I., Liebau, E. (2005) The highly abundant protein Ag-Ibp55 from Ascaridia galli represents a novel type of lipid-binding proteins . Journal of Biological Chemistry, 280(50):41429-41438. |
Journal Article | 129 | Schenk, G., Margraf, Th., Torda, A. Protein sequence and structure alignments within one framework Algorithms for Molecular Biology, 3(4): 10.1186/1748-7188-3-4. |
2008 | Schenk, G., Margraf, Th., Torda, A. (2008) Protein sequence and structure alignments within one framework . Algorithms for Molecular Biology, 3(4):10.1186/1748-7188-3-4. |
Journal Article | 130 | Margraf, Th., Schenk, G., Torda, A. E. The SALAMI protein structure search server Nucleic Acids Research, 37(suppl 2): W480-W484. |
2009 | Margraf, Th., Schenk, G., Torda, A. E. (2009) The SALAMI protein structure search server . Nucleic Acids Research, 37(suppl 2):W480-W484. |
Journal Article | 131 | Kleesiek, J., Torda, A.E. RNA secondary structure prediction using a self-consistent mean field approach Journal of Computational Chemistry, 31(6): 1135-1142. |
2009 | Kleesiek, J., Torda, A.E. (2009) RNA secondary structure prediction using a self-consistent mean field approach . Journal of Computational Chemistry, 31(6):1135-1142. |
Journal Article | 132 | Kong, S-G., Fan, W-L., Chen, H-D., Wigger, J., Torda, A.E., Lee, H.C. A quantitative measure of randomness and order for complete genomes 01 Physical Reviews, 01(01): 01. |
2009 | Kong, S-G., Fan, W-L., Chen, H-D., Wigger, J., Torda, A.E., Lee, H.C. (2009) A quantitative measure of randomness and order for complete genomes 01. Physical Reviews, 01(01):01. |
Book Section | 133 | Torda, A.E. Protein Threading 01 In The Proteomics Handbook (Walker, J.M., ed.), Vol. 01, pp. 921-938. Humana Press. |
2005 | Torda, A.E. (2005) Protein Threading 01. In The Proteomics Handbook (Walker, J.M., ed.), Vol. 01, pp. 921-938. Humana Press. |
Journal Article | 134 | Nield, B.S., Willows, R.D., Torda, A.E., Gillings, M.R., Holmes, A.J., Nevalainen, K.M.H., Stokes, H.W., Mabbutt, B.M. New enzymes from environmental cassette arrays: Functional attributes of a phosphotransferase and a RNA-methyltransferase 01 Protein Sciences, 13(01): 1651-1659. |
2004 | Nield, B.S., Willows, R.D., Torda, A.E., Gillings, M.R., Holmes, A.J., Nevalainen, K.M.H., Stokes, H.W., Mabbutt, B.M. (2004) New enzymes from environmental cassette arrays: Functional attributes of a phosphotransferase and a RNA-methyltransferase 01. Protein Sciences, 13(01):1651-1659. |
Journal Article | 135 | Cootes, A.P., Curmi, P.M.G., Torda, A.E. Automated Protein Design and Sequence Optimisation: Scoring Functions and the Search Problem 01 Current Protein & Peptide Science, 3(01): 255-271. |
2000 | Cootes, A.P., Curmi, P.M.G., Torda, A.E. (2000) Automated Protein Design and Sequence Optimisation: Scoring Functions and the Search Problem 01. Current Protein & Peptide Science, 3(01):255-271. |
Journal Article | 136 | Torda, A.E. Guessing protein structures 01 Trends in Biotechnology, 15(01): 380-381. |
1997 | Torda, A.E. (1997) Guessing protein structures 01. Trends in Biotechnology, 15(01):380-381. |
Conference Proceedings | 137 | van Gunsteren, W.F., Nanzer, A.P., Torda, A.E. Molecular simulation methods for generating ensembles or trajectories consistent with experimental data 01 Monte Carlo and Molecular Dynamics of Condensed Matter (Binder, K., Cicotti, G., ed.). Ital. Phys. Soc. Bologna. |
1996 | van Gunsteren, W.F., Nanzer, A.P., Torda, A.E. (1996) Molecular simulation methods for generating ensembles or trajectories consistent with experimental data 01. Monte Carlo and Molecular Dynamics of Condensed Matter (Binder, K., Cicotti, G., ed.). Ital. Phys. Soc. Bologna. |
Conference Proceedings | 138 | van Gunsteren, W.F., Huber, T., Torda, A.E. Biomolecular modelling: overview of methodsto search and sample conformational space 01 European Conference on Computational Chemistry (Bernardi, F., Rivali, J-L., ed.). 01. |
1995 | van Gunsteren, W.F., Huber, T., Torda, A.E. (1995) Biomolecular modelling: overview of methodsto search and sample conformational space 01. European Conference on Computational Chemistry (Bernardi, F., Rivali, J-L., ed.). 01. |
Book Section | 139 | Scheek, R.M., Torda, A.E., Kemminck, J., van Gunsteren, W.F. Structure Determination by NMR: The Modeling of NMR Parameters as Ensemble Averages 01 In Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Hoch, J.C., Poulsen, F.M., Redfield, C., ed.), Vol. 01, pp. 209-218. 01. |
1991 | Scheek, R.M., Torda, A.E., Kemminck, J., van Gunsteren, W.F. (1991) Structure Determination by NMR: The Modeling of NMR Parameters as Ensemble Averages 01. In Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Hoch, J.C., Poulsen, F.M., Redfield, C., ed.), Vol. 01, pp. 209-218. 01. |
Journal Article | 140 | Ayers, D.J., Gooley, P.R., Widmer-Cooper, A., Torda, A.E. Enhanced protein fold recognition using secondary structure information from NMR Protein Science, 8(01): 1127-1133. |
1999 | Ayers, D.J., Gooley, P.R., Widmer-Cooper, A., Torda, A.E. (1999) Enhanced protein fold recognition using secondary structure information from NMR . Protein Science, 8(01):1127-1133. |
Book Section | 141 | Torda, A.E., Scheek, R.M., van Gunsteren, W.F. Time Average Distance Restraints in NMR Based Structural Refinement 01 In Computational Aspects of the Study of Biological Macrmolecules by Nuclear Magnetic Resonance Spectroscopy (Hoch, J.C., Poulsen, F.M., Redfield, C., ed.), Vol. 01, pp. 219-226. 01. |
1991 | Torda, A.E., Scheek, R.M., van Gunsteren, W.F. (1991) Time Average Distance Restraints in NMR Based Structural Refinement 01. In Computational Aspects of the Study of Biological Macrmolecules by Nuclear Magnetic Resonance Spectroscopy (Hoch, J.C., Poulsen, F.M., Redfield, C., ed.), Vol. 01, pp. 219-226. 01. |
Journal Article | 142 | Textor, J., Hansen, B. Hybrid Simulation Algorithms for an Agent-Based Model of the Immune Response 01 Cybernetics and Systems, 40(5): 390-417. |
2009 | Textor, J., Hansen, B. (2009) Hybrid Simulation Algorithms for an Agent-Based Model of the Immune Response 01. Cybernetics and Systems, 40(5):390-417. |
Journal Article | 143 | Huber, T., Russell, A.J., Ayers, D., Torda, A.E. SAUSAGE: Protein threading with flexible force fields Bioinformatics, 15(01): 1064-1065. |
1999 | Huber, T., Russell, A.J., Ayers, D., Torda, A.E. (1999) SAUSAGE: Protein threading with flexible force fields . Bioinformatics, 15(01):1064-1065. |
Journal Article | 144 | Ayers, D. J., Huber, T., Torda, A. E. Protein fold recognition score functions: unusual construction strategies Proteins, 36(4): 454-461. |
1999 | Ayers, D. J., Huber, T., Torda, A. E. (1999) Protein fold recognition score functions: unusual construction strategies . Proteins, 36(4):454-461. |
Journal Article | 145 | Cootes, A. P., Curmi, P. M. G., Torda, A. E. Biased Monte Carlo optimization of protein sequences Journal of Chemical Physics, 113(6): 2489-2496. |
2000 | Cootes, A. P., Curmi, P. M. G., Torda, A. E. (2000) Biased Monte Carlo optimization of protein sequences . Journal of Chemical Physics, 113(6):2489-2496. |
Journal Article | 317 | Matthies, M.C.; Bienert, S.; Torda, A.E. Dynamics in Sequence Space for RNA Secondary Structure Design J. Chem. Theory Comput. |
2012 | Matthies, M.C.; Bienert, S.; Torda, A.E. (2012) Dynamics in Sequence Space for RNA Secondary Structure Design . J. Chem. Theory Comput. |
Journal Article | 329 | Magbanua, E., Zivkovic, T., Hansen, B., Beschorner, N., Meyer, C., Lorenzn, I., Grötzinger, J., Hauber, J., Torda, A.E., Mayer, G., Rose-John, S., Hahn, U.
d(GGGT)4 and r(GGGU)4 are both HIV-1 inhibitors and interleukin-6 receptor aptamers Landes Bioscience Journals: RNA Biology, 10(2) |
2013 | Magbanua, E., Zivkovic, T., Hansen, B., Beschorner, N., Meyer, C., Lorenzn, I., Grötzinger, J., Hauber, J., Torda, A.E., Mayer, G., Rose-John, S., Hahn, U.
(2013) d(GGGT)4 and r(GGGU)4 are both HIV-1 inhibitors and interleukin-6 receptor aptamers . Landes Bioscience Journals: RNA Biology, 10(2) |
Journal Article | 338 | Wiegels, T., Bienert, S., Torda, A.E. Fast alignment and comparison of RNA structures Bioinformatics |
2013 | Wiegels, T., Bienert, S., Torda, A.E. (2013) Fast alignment and comparison of RNA structures . Bioinformatics |
Journal Article | 339 | Torda, A.E., Groves, M.R., Wedderhoff, I., Ortiz de Orué Lucana, D. Elucidation of haem-binding sites in the actinobacterial protein HbpS FEMS Microbiology Letters |
2013 | Torda, A.E., Groves, M.R., Wedderhoff, I., Ortiz de Orué Lucana, D. (2013) Elucidation of haem-binding sites in the actinobacterial protein HbpS . FEMS Microbiology Letters |
Journal Article | 353 | Simons, J.R., Mosisch, M., Torda, A.E., Hilterhaus, L. Site directed immobilization of glucose-6-phosphate dehydrogenase via thiol-disulfide interchange: Influence on catalytic activity of cysteines introduced at different positions Journal of Biotechnology, 167: 1-7. |
2013 | Simons, J.R., Mosisch, M., Torda, A.E., Hilterhaus, L. (2013) Site directed immobilization of glucose-6-phosphate dehydrogenase via thiol-disulfide interchange: Influence on catalytic activity of cysteines introduced at different positions . Journal of Biotechnology, 167:1-7. |
Journal Article | 362 | Nieselt K., Dietzsch J., Heinrich J., Pritzkau A., Mosisch M., Bartz D. Visuelle Analytik für Genexpressionsdaten Datenbank-Spektrum, 31 |
2010 | Nieselt K., Dietzsch J., Heinrich J., Pritzkau A., Mosisch M., Bartz D. (2010) Visuelle Analytik für Genexpressionsdaten . Datenbank-Spektrum, 31 |
Book Section | 378 | Bersch, B., Groves, M.R., Klare, J.P., Torda, A.E., Ortiz de Orué Lucana, D. Applications of Structural Biology and Bioinformatics in the Investigation of Oxidative Stress-Related Processes In Systems Biology of Free Redicals annd Antioxidants (Laher, Ismail , ed.), pp. 505-534. Springer. |
2014 | Bersch, B., Groves, M.R., Klare, J.P., Torda, A.E., Ortiz de Orué Lucana, D. (2014) Applications of Structural Biology and Bioinformatics in the Investigation of Oxidative Stress-Related Processes . In Systems Biology of Free Redicals annd Antioxidants (Laher, Ismail , ed.), pp. 505-534. Springer. |
Journal Article | 380 | Torda, A.E. Not assessing the efficiency of multiple sequence alignment programs Algorithms for Molecular Biology, 9(18) |
2014 | Torda, A.E. (2014) Not assessing the efficiency of multiple sequence alignment programs . Algorithms for Molecular Biology, 9(18) |
Journal Article | 386 | Ortiz de Orue Lucana, D., Fedosov, S. N., Wedderhoff, I., Che, E. N., Torda, A. E. The Extracellular Heme-binding Protein HbpS from the Soil Bacterium Streptomyces reticuli Is an Aquo-cobalamin Binder The Journal of Biological Chemistry, 289(49): 34214-34228. |
2014 | Ortiz de Orue Lucana, D., Fedosov, S. N., Wedderhoff, I., Che, E. N., Torda, A. E. (2014) The Extracellular Heme-binding Protein HbpS from the Soil Bacterium Streptomyces reticuli Is an Aquo-cobalamin Binder . The Journal of Biological Chemistry, 289(49):34214-34228. |
Journal Article | 450 | Myllykoski, M., Seidel, L., Muruganandam, G., Raasakka, A., Torda, A.E., Kursula, P. Structural and functional evolution of 2´,3´-cyclic nucleotide 3´-phosphodiesterase Brain Research: 00701-5. |
2015 | Myllykoski, M., Seidel, L., Muruganandam, G., Raasakka, A., Torda, A.E., Kursula, P. (2015) Structural and functional evolution of 2´,3´-cyclic nucleotide 3´-phosphodiesterase . Brain Research:00701-5. |
Journal Article | 451 | Marella, C., Torda, A.E., Schwudke, D. The LUX Score: A Metric for Lipidome Homology PLOS Computational Biology, 10: 1004511. |
2015 | Marella, C., Torda, A.E., Schwudke, D. (2015) The LUX Score: A Metric for Lipidome Homology . PLOS Computational Biology, 10:1004511. |
Journal Article | 452 | Bhargav, S.P., Vahokoski, J., Kallio, J.P., Torda, A.E., Kursula, P., Kursula, I. Two independently folding units of Plasmodium profilin suggest evolution via gene fusion Cellular and Molecular Life Sciences, 72(21): 4193-4203. |
2015 | Bhargav, S.P., Vahokoski, J., Kallio, J.P., Torda, A.E., Kursula, P., Kursula, I. (2015) Two independently folding units of Plasmodium
profilin suggest evolution via gene fusion . Cellular and Molecular Life Sciences, 72(21):4193-4203. |
Book Section | 461 | Meyer, C., Hahn, U., Torda, A.E. RNA aptamer design In De Novo Molecular Design (Gisbert Schneider, ed.), pp. 519-542 |
2013 | Meyer, C., Hahn, U., Torda, A.E. (2013) RNA aptamer design . In De Novo Molecular Design (Gisbert Schneider, ed.), pp. 519-542 |
Journal Article | 465 | Ortiz de Orué Lucana, D., Hickey, N., Hensel, M., Klare, J.P., Geremia, S., Tiufiakova, T., Torda, A.E. The Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode Frontiers in Microbiology |
2016 | Ortiz de Orué Lucana, D., Hickey, N., Hensel, M., Klare, J.P., Geremia, S., Tiufiakova, T., Torda, A.E. (2016) The Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode . Frontiers in Microbiology |
Journal Article | 579 | Matthies, Marco C.; Krueger, Ryan; Torda, Andrew E.; Ward, Max Differentiable partition function calculation for RNA Nucleic Acids Research, 52(3): 14e. |
2023 | Matthies, Marco C.; Krueger, Ryan; Torda, Andrew E.; Ward, Max (2023) Differentiable partition function calculation for RNA . Nucleic Acids Research, 52(3):14e. |
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